Publications

Beier, T, Pape, C, Rahaman, N, Prange, T, Berg, S, Bock, D, Cardona, A, Knott, G W, Plaza, S M, Scheffer, L K, Köthe, U, Kreshuk, A and Hamprecht, F A (2017). Multicut brings automated neurite segmentation closer to human performance. Nature Methods. 14 101-102. http://rdcu.be/oVDQ

Jähne, B, Brocke, M, Eisele, H, Hader, S, Hamprecht, F A, Happold, W, Raisch, F and Restle, J (2002). Multidimensionale Bildverarbeitung in der Produktion. QZ. 47 1154--1159. http://www.qz-online.de/qz-zeitschrift/archiv/artikel/multidimensionale-bildverarbeitung-in-der-produktion-fuer-anspruchsvolle-338129.html

Menze, B H and Hamprecht, F A (2010). Multimodal Medical Image Analysis: from Visualization to Disease Modeling. Zeitschrift für Med. Physik. 1 1-2

Technical Report (481.58 KB)

Menze, B H, Petrich, W and Hamprecht, F A (2007). Multivariate feature selection and hierarchical classification for infrared spectroscopy: serum-based detection of bovine spongiform encephalopathy. Analytical and Bioanalytical Chemistry. 387 1801-1807

Technical Report (283.47 KB)

Trittler, S and Hamprecht, F A (2009). Near-Optimum Sampling Design and an Efficient Algorithm for Single Tone Frequency Estimation. Digital Signal Processing. 19 628-639

Technical Report (511.23 KB)

Krasowki, N, Beier, T, Knott, G W, Köthe, U, Hamprecht, F A and Kreshuk, A (2017). Neuron Segmentation with High-Level Biological Priors. IEEE Transactions on Medical Imaging. 37

Renard, B Y, Kirchner, M, Steen, H, Steen, J A J and Hamprecht, F A (2008). NITPICK: Peak Identification for Mass Spectrometry Data. BMC Bioinformatics. 9 355

Technical Report (643.89 KB)

Restle, J, Hissmann, M and Hamprecht, F A (2004). Nonparametric Smoothing of Height maps using ``Confidence'' values. Optical Engineering. 43 866-871

Technical Report (1.07 MB)

Ulman, V, Maška, M, Magnusson, K E G, Ronneberger, O, Haubold, C, Harder, N, Matula, P, Matula, P, Svoboda, D, Radojevic, M, Smal, I, Rohr, K, Jaldén, J, Blau, H M, Dzyubachyk, O, Lelieveldt, B, Xiao, P, Li, Y, Cho, S - Y, Dufour, A, Olivo-Marin, J C, Reyes-Aldasoro, C C, Solis-Lemus, J A, Bensch, R, Brox, T, Stegmaier, J, Mikut, R, Wolf, S, Hamprecht, F A, Esteves, T, Quelhas, P, Demirel, Ö, Malström, L, Jug, F, Tomančák, P, Meijering, E, Muñoz-Barrutia, A, Kozubek, M and Ortiz-de-Solorzano, C (2017). An Objective Comparison of Cell Tracking Algorithms. Nature Methods. 14 1141-1152

Technical Report (4.24 MB)

Kaster, F O, Merkel, B, Nix, O and Hamprecht, F A (2011). An object-oriented library for systematic training and comparison of classifiers for computer-assisted tumor diagnosis from MRSI measurements. Computer Science - Research and Development. 26 65-85

Technical Report (808.16 KB)

Horvát, E - A, Hanselmann, M, Hamprecht, F A and Zweig, K A (2012). One plus one makes three (for social networks). PLoS ONE. 4,7

Menze, B H, Lichy, M P, Bachert, P, Kelm, B Michael, Schlemmer, H P and Hamprecht, F A (2006). Optimal Classification of Long Echo Time in vivo Magnetic Resonance Spectra in the Detection of Recurrent Brain Tumor. NMR in Biomedicine. 19 599-609

Technical Report (289.77 KB)

Künsch, H R, Agrell, E and Hamprecht, F A (2005). Optimal lattices for sampling. IEEE Transactions on Information Theory. 51 634-647

Renard, B Y, Xu, B, Kirchner, M, Zickmann, F, Winter, D, Korten, S, Brattig, N, Tzur, A, Hamprecht, F A and Steen, H (2012). Overcoming species boundaries in peptide identification with BICEPS. Molecular and Cellular Proteomics. 11

Technical Report (444.6 KB)

Hamprecht, F A, Jost, D, Rüttimann, M, Calamai, F and Kowalski, J J (2001). Preliminary results on the prediction of countershock success with fibrillation power. Resuscitation. 50 297-299

Jäger, M and Hamprecht, F A (2008). Principal Component Imagery for the Quality Monitoring of Dynamic Laser Welding Processes. IEEE Transactions on Industrial Electronics. 56:4 1307-1313

Görlitz, L, Menze, B H, Kelm, B Michael and Hamprecht, F A (2009). Processing Spectral Data. Surface and Interface Analysis. 41 636-644

Technical Report (4.17 MB)

Sieg, S, Stutz, B, Schmidt, T, Hamprecht, F A and Maier, W F (2006). A QCAR-approach to materials modelling. Journal of Molecular Modeling. 12 611-619

Technical Report (343.11 KB)

Lou, X, Fiaschi, L, Köthe, U and Hamprecht, F A (2012). Quality Classification of Microscopic Imagery with Weakly Supervised Learning. MICCAI-MLMI. Proceedings. 176-183

Technical Report (4.15 MB)

König, T, Menze, B H, Kirchner, M, Monigatti, F, Parker, K C, Patterson, T, Steen, J J, Hamprecht, F A and Steen, H (2008). Robust Prediction of the MASCOT Score for an Improved Quality Assessment in Mass Spectrometric Proteomics. Journal of Proteome Research. 7 3708-3717

Technical Report (1.16 MB)

Andres, B, Köthe, U, Kröger, T and Hamprecht, F A (2010). Runtime-Flexible Multi-dimensional Views and Arrays for C++98 and C++0x. ArXiv e-prints. http://arxiv.org/abs/1008.2909v1

Technical Report (415.54 KB)

Staudacher, M, Hamprecht, F A and Görlitz, L (2009). Self Adjustment of Scanning Electron Microscopes / Selbstadaptivität von Rasterelektronenmikroskopen. Patent, Patent Number WO2009062781A1

Technical Report (46.64 KB)

Maco, B, Cantoni, M, Holtmaat, A, Kreshuk, A, Hamprecht, F A and Knott, G W (2014). Semiautomated Correlative 3D Electron Microscopy of In Vivo Imaged Axons and Dendrites. Nature Protocols. 9 1354-1366

Technical Report (2.01 MB)

Hanselmann, M, Voss, B, Renard, B Y, Lindner, M, Köthe, U, Kirchner, M and Hamprecht, F A (2011). SIMA: Simultaneous Multiple Alignment of LC/MS Peak Lists. Bioinformatics. 27 (7) 987-993

Technical Report (2.2 MB)

Köthe, U, Herrmannsdörfer, F, Kats, I and Hamprecht, F A (2014). SimpleSTORM: a fast, self-calibrating reconstruction algorithm for localization microscopy. Histochemistry and Cell Biology. 141 613-627

Technical Report (2.29 MB)

Rahaman, N, Arpit, D, Baratin, A, Draxler, F, Lin, M, Hamprecht, F A, Bengio, Y and Courville, A (2018). On the spectral bias of deep neural networks. arXiv preprint arXiv:1806.08734

Jäger, M, Humbert, S and Hamprecht, F A (2008). Sputter Tracking for the Automatic Monitoring of Industrial Laser Welding Processes. IEEE Transactions on Industrial Electronics. 55 2177-2184

Technical Report (1.83 MB)

Hamprecht, F A, Peter, C, Daura, X, Thiel, W and van Gunsteren, W F (2001). A strategy for analysis of (molecular) equilibrium simulations: configuration space density estimation, clustering and visualization. Journal of Chemical Physics. 114 2079-2089

Lou, X and Hamprecht, F A (2012). Structured Learning from Partial Annotations. ICML 2012. Proceedings. http://icml.cc/discuss/2012/753.html

Technical Report (843.45 KB)

Frank, M, Plaue, M, Rapp, H, Köthe, U, Jähne, B and Hamprecht, F A (2009). Theoretical and Experimental Error Analysis of Continuous-Wave Time-Of-Flight Range Cameras. Optical Engineering. 48, 013602

Technical Report (2.03 MB)

Frank, M, Plaue, M, Rapp, H, Köthe, U, Jähne, B and Hamprecht, F A (2009). Theoretical and experimental error analysis of continuous-wave time-of-flight range cameras. Opt. Eng. 48 013602

Rapp, H, Frank, M, Hamprecht, F A and Jähne, B (2008). A Theoretical and Experimental Investigation of the Systematic Errors and Statistical Uncertainties of Time-of-Flight Cameras. Int. J. Intelligent Systems Technologies and Applications. 5 402-413

Technical Report (798.23 KB)

Rapp, H, Frank, M, Hamprecht, F A and Jähne, B (2008). A theoretical and experimental investigation of the systematic errors and statistical uncertainties of time-of-flight cameras. Int. J. Intelligent Systems Technologies and Applications. 5 402--413

Bühl, M and Hamprecht, F A (1998). Theoretical Investigation of NMR Chemical Shifts and Reactivities of Oxovanadium (V) Compounds. Journal of Computational Chemistry. 19 113-122

Cali, C, Baghabra, J, Boges, D J, Holst, G R, Kreshuk, A, Hamprecht, F A, Srinivasan, M, Lehväslaiho, H and Magistretti, P J (2015). Three-dimensional immersive virtual reality for studying cellular compartments in 3D models from EM preparations of neural tissues. Journal of Comparative Neurology. 524 23-38

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